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Springer Nature
Subject Source Springer Nature URL http://dx.doi.org/10.1186/s13019-014-0184-7view Article Title A retrospective analysis of myocardial preservation techniques during coronary artery bypass graft surgery: are we protecting the heart?Authors Candilio, Luciano; Malik, Abdul; Ariti, Con; Khan, Sherbano A; Barnard, Matthew; Di Salvo, Carmelo; Lawrence, David R; Hayward, Martin P; Yap, John A; Sheikh, Amir M; McGregor, Christopher G A; Kolvekar, Shyam K; Hausenloy, Derek J; Yellon, Derek M; Roberts, NeilAbstract AbstractBackgroundRetrograde perfusion into coronary sinus during coronary artery bypass graft (CABG) surgery reduces the need for cardioplegic interruptions and ensures the distribution of cardioplegia to stenosed vessel territories, therefore enhancing the delivery of cardioplegia to the subendocardium. Peri-operative myocardial injury (PMI), as measured by the rise of serum level of cardiac biomarkers, has been associated with short and long-term clinical outcomes. We conducted a retrospective analysis to investigate whether the combination of antegrade and retrograde techniques of cardioplegia delivery is associated with a reduced PMI than that observed with the traditional methods of myocardial preservation.MethodsFifty-four consecutive patients underwent CABG surgery using either antegrade cold blood cardioplegia (group 1, n = 28) or cross-clamp fibrillation (group 2, n = 16) or antegrade retrograde warm blood cardioplegia (group 3, n = 10). The study primary end-point was PMI, evaluated with total area under the curve (AUC) of high-sensitivity Troponin-T (hsTnT), measured pre-operatively and at 6, 12, 24, 48 and 72 hours post-surgery. Secondary endpoints were acute kidney injury (AKI) and inotrope scores, length of intensive care unit (ICU) and hospital stay, new onset atrial fibrillation (AF) and clinical outcomes at 6 weeks (death, non-fatal myocardial infarction, coronary artery revascularization, stroke).ResultsThere was evidence that mean total AUC of hsTnT was different among the three groups (P = 0.050). In particular mean total AUC of hsTnT was significantly lower in group 3 compared to both group 1 (-16.55; 95% CI: -30.08, -3.01; P = 0.018) with slightly weaker evidence of a lower mean hsTnT in group 3 when compared to group 2 (-15.13; 95% CI -29.87, -0.39; P = 0.044). There was no evidence of a difference when comparing group 2 to group 1 (-1.42,; 95% CI: -12.95, 10.12, P = 0.806).ConclusionsOur retrospective analysis suggests that, compared to traditional methods of myocardial preservation, antegrade retrograde cardioplegia may reduce PMI in patients undergoing first time CABG surgery.Is Part Of Journal of Cardiothoracic Surgery 2014-12-31 , Vol.9 (1) , 1 Identifier EISSN: null ; PISSN: DOI 10.1186/s13019-014-0184-7Publisher BioMed CentralLicense ©2014 Candilio et al.; licensee BioMed Central. -
Springer Nature
Subject Source Springer Nature URL http://dx.doi.org/10.1186/s13058-014-0497-4view Article Title Elafin is downregulated during breast and ovarian tumorigenesis but its residual expression predicts recurrenceAuthors Caruso, Joseph A; Karakas, Cansu; Zhang, Jing; Yi, Min; Albarracin, Constance; Sahin, Aysegul; Bondy, Melissa; Liu, Jinsong; Hunt, Kelly K; Keyomarsi, KhandanAbstract AbstractIntroductionElafin is an endogenous serine protease inhibitor. The majority of breast cancer cell lines lack elafin expression compared to human mammary epithelial cells. In this study, we hypothesized that elafin is downregulated during breast and ovarian tumorigenesis.MethodsWe examined elafin expression by immunohistochemistry (IHC) in specimens of normal breast tissue (n = 24), ductal carcinoma in situ (DCIS) (n = 54), and invasive breast cancer (n = 793). IHC analysis of elafin expression was also performed in normal fallopian tube tissue (n = 20), ovarian cystadenomas (n = 9), borderline ovarian tumors (n = 21), and invasive ovarian carcinomas (n = 216). To understand the significance of elafin in luminal breast cancer cell lines, wild-type or M25G elafin (lacking the protease inhibitory function) were exogenously expressed in MCF-7 and T47D cells.ResultsElafin expression was downregulated in 24% of DCIS and 83% of invasive breast tumors when compared to elafin expression in the normal mammary epithelium. However, the presence of elafin-positive cells in invasive breast tumors, even at low frequency, correlated with poor recurrence-free survival (RFS), reduced overall survival (OS), and clinicopathological markers of aggressive tumor behavior. Elafin-positive cells were an especially strong and independent prognostic marker of reduced RFS in IHC-defined luminal A-like tumors. Elafin was also downregulated in 33% of ovarian cystadenomas, 43% of borderline ovarian tumors, and 86% of invasive ovarian carcinomas when compared to elafin expression in the normal fallopian tube. In ovarian tumors, elafin-positive cells were correlated with reduced RFS, OS and disease-specific survival (DSS) only in stage I/II patients and not in stage III/IV patients. Notably, exogenous expression of elafin or elafin M25G in the luminal breast cancer cell lines MCF-7 and T47D significantly decreased cell proliferation in a protease inhibitory domain-independent manner.ConclusionsElafin predicts poor outcome in breast and ovarian cancer patients and delineates a subset of endocrine receptor-positive breast cancer patients susceptible to recurrence who could benefit from more aggressive intervention. Our in vitro results suggest that elafin arrests luminal breast cancer cells, perhaps suggesting a role in tumor dormancy.Is Part Of Breast Cancer Research 2014-12-31 , Vol.16 (6) , 1 Identifier EISSN: null ; PISSN: DOI 10.1186/s13058-014-0497-4Publisher BioMed CentralLicense ©2014 Caruso et al.; licensee BioMed Central. -
PLOS
Subject 의과학, 인문사회과학 Source PLOS URL http://dx.doi.org/10.1371/journal.pone.0116428view Article Title The Study of Fingerprint Characteristics of Dayi Pu-Erh Tea Using a Fully Automatic HS-SPME/GC–MS and Combined Chemometrics MethodAuthors Shidong Lv; Yuanshuang Wu; Jiangsheng Zhou; Ming Lian; Changwen Li; Yongquan Xu; Shunhang Liu; Chao Wang; Qingxiong Meng; Sara AmancioAbstract The quality of tea is presently evaluated by the sensory assessment of professional tea tasters, however, this approach is both inconsistent and inaccurate. A more standardized and efficient method is urgently needed to objectively evaluate tea quality. In this study, the chemical fingerprint of 7 different Dayi Pu-erh tea brands and 3 different Ya'an tea brands on the market were analyzed using fully automatic headspace solid-phase microextraction (HS-SPME) combined with gas chromatography-mass spectrometry (GC–MS). A total of 78 volatiles were separated, among 75 volatiles were identified by GC–MS in seven Dayi Pu-erh teas, and the major chemical components included methoxyphenolic compounds, hydrocarbons, and alcohol compounds, such as 1,2,3-trimethoxybenzene, 1,2,4-trimethoxybenzene, 2,6,10,14-tetramethyl-pentadecane, linalool and its oxides, α-terpineol, and phytol. The overlapping ratio of peaks (ORP) of the chromatogram in the seven Dayi Pu-erh tea samples was greater than 89.55%, whereas the ORP of Ya'an tea samples was less than 79.10%. The similarity and differences of the Dayi Pu-erh tea samples were also characterized using correlation coefficient similarity and principal component analysis (PCA). The results showed that the correlation coefficient of similarity of the seven Dayi Pu-erh tea samples was greater than 0.820 and was gathered in a specific area, which showed that samples from different brands were basically the same, despite have some slightly differences of chemical indexes was found. These results showed that the GC-MS fingerprint combined with the PCA approach can be used as an effective tool for the quality assessment and control of Pu-erh tea.Is Part Of PLoS ONE 2014-12-31 , Vol.9 (12) Identifier EISSN: 1932-6203 ; PISSN: DOI 10.1371/journal.pone.0116428Publisher Public Library of ScienceCategory /Physical sciences/Materials science/Materials by attribute/Odorants; /Physical sciences/Chemistry/Chemical compounds/Organic compounds/Alcohols; /Physical sciences/Chemistry/Chemical compounds/Hydrocarbons; /Medicine and health sciences/Nutrition/Diet/Beverages/Tea; /Engineering and technology/Industrial engineering/Quality control; /Biology and life sciences/Biochemistry/Metabolism/Metabolic processes/Fermentation; /Research and analysis methods/Chromatographic techniques/Gas chromatography-mass spectrometry; /Physical sciences/Chemistry/Organic chemistry/Organic compounds/Alcohols; /Research and analysis methods/Spectrum analysis techniques/Mass spectrometry/Gas chromatography-mass spectrometry; /Biology and life sciences/Nutrition/Diet/Beverages/Tea; /Physical sciences/Chemistry/Analytical chemistry/Mass spectrometry/Gas chromatography-mass spectrometry; /Research and analysis methods/Mathematical and statistical techniques/Statistical methods/Multivariate analysis/Principal component analysis; /Physical sciences/Mathematics/Statistics (mathematics)/Statistical methods/Multivariate analysis/Principal component analysisLicense Lv et al This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
PLOS
Subject 의과학, 인문사회과학 Source PLOS URL http://dx.doi.org/10.1371/journal.pone.0115989view Article Title Spotting East African Mammals in Open Savannah from SpaceAuthors Zheng Yang; Tiejun Wang; Andrew K Skidmore; Jan de Leeuw; Mohammed Y Said; Jim Freer; Marco CristaniAbstract Knowledge of population dynamics is essential for managing and conserving wildlife. Traditional methods of counting wild animals such as aerial survey or ground counts not only disturb animals, but also can be labour intensive and costly. New, commercially available very high-resolution satellite images offer great potential for accurate estimates of animal abundance over large open areas. However, little research has been conducted in the area of satellite-aided wildlife census, although computer processing speeds and image analysis algorithms have vastly improved. This paper explores the possibility of detecting large animals in the open savannah of Maasai Mara National Reserve, Kenya from very high-resolution GeoEye-1 satellite images. A hybrid image classification method was employed for this specific purpose by incorporating the advantages of both pixel-based and object-based image classification approaches. This was performed in two steps: firstly, a pixel-based image classification method, i.e., artificial neural network was applied to classify potential targets with similar spectral reflectance at pixel level; and then an object-based image classification method was used to further differentiate animal targets from the surrounding landscapes through the applications of expert knowledge. As a result, the large animals in two pilot study areas were successfully detected with an average count error of 8.2%, omission error of 6.6% and commission error of 13.7%. The results of the study show for the first time that it is feasible to perform automated detection and counting of large wild animals in open savannahs from space, and therefore provide a complementary and alternative approach to the conventional wildlife survey techniques.Is Part Of PLoS ONE 2014-12-31 , Vol.9 (12) Identifier EISSN: 1932-6203 ; PISSN: DOI 10.1371/journal.pone.0115989Publisher Public Library of ScienceCategory /Research and analysis methods/Imaging techniques; /Biology and life sciences/Neuroscience/Cognitive science/Artificial intelligence/Artificial neural networks; /Research and analysis methods/Research design/Pilot studies; /Computer and information sciences/Artificial intelligence/Artificial neural networks; /Biology and life sciences/Zoology/Animal types/Wildlife; /Biology and life sciences/Zoology/Animal types/Large animals; /Biology and life sciences/Organisms/Plants/Shrubs; /Biology and life sciences/Neuroscience/Computational neuroscience/Artificial neural networks; /Biology and life sciences/Computational biology/Computational neuroscience/Artificial neural networks; /Biology and life sciences/Organisms/Animals/Animal types/Wildlife; /Biology and life sciences/Organisms/Animals/Animal types/Large animals; /Biology and life sciences/Organisms/Animals/Vertebrates/Amniotes/Mammals/Wildebeest; /Biology and life sciences/Organisms/Animals/Vertebrates/Amniotes/Mammals/Equines/ZebrasLicense Yang et al This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
arXiv
Subject Source arXiv URL https://arxiv.org/abs/1501.00098view Article Title Optical conductivity and optical effective mass in a high-mobility organic semiconductor: Implications for the nature of charge transportAuthors Yuan Li; Yuanping Yi; Veaceslav Coropceanu; Jean-Luc BrédasAbstract We present a multiscale modeling of the infrared optical properties of the rubrene crystal. The results are in very good agreement with the experimental data that point to nonmonotonic features in the optical conductivity spectrum and small optical effective masses. We find that, in the static-disorder approximation, the nonlocal electron-phonon interactions stemming from low-frequency lattice vibrations can decrease the optical effective masses and lead to lighter quasiparticles. On the other hand, the charge-transport and infrared optical properties of the rubrene crystal at room temperature are demonstrated to be governed by localized carriers driven by inherent thermal disorders. Our findings underline that the presence of apparently light carriers in high-mobility organic semiconductors does not necessarily imply band-like transport.Is Part Of Phys. Rev. B 90, 245112 (2014) 2014-12-31 Identifier ISSN: DOI 10.1103/PhysRevB.90.245112Category cond-mat.mtrl-sciLicense -
PLOS
Subject 의과학, 인문사회과학 Source PLOS URL http://dx.doi.org/10.1371/journal.pone.0116238view Article Title Algorithm for Automatic Forced Spirometry Quality Assessment: Technological DevelopmentsAuthors Umberto Melia; Felip Burgos; Montserrat Vallverdú; Filip Velickovski; Magí Lluch-Ariet; Josep Roca; Pere Caminal; Josué SznitmanAbstract We hypothesized that the implementation of automatic real-time assessment of quality of forced spirometry (FS) may significantly enhance the potential for extensive deployment of a FS program in the community. Recent studies have demonstrated that the application of quality criteria defined by the ATS/ERS (American Thoracic Society/European Respiratory Society) in commercially available equipment with automatic quality assessment can be markedly improved. To this end, an algorithm for assessing quality of FS automatically was reported. The current research describes the mathematical developments of the algorithm. An innovative analysis of the shape of the spirometric curve, adding 23 new metrics to the traditional 4 recommended by ATS/ERS, was done. The algorithm was created through a two-step iterative process including: (1) an initial version using the standard FS curves recommended by the ATS; and, (2) a refined version using curves from patients. In each of these steps the results were assessed against one expert's opinion. Finally, an independent set of FS curves from 291 patients was used for validation purposes. The novel mathematical approach to characterize the FS curves led to appropriate FS classification with high specificity (95%) and sensitivity (96%). The results constitute the basis for a successful transfer of FS testing to non-specialized professionals in the community.Is Part Of PLoS ONE 2014-12-31 , Vol.9 (12) Identifier EISSN: 1932-6203 ; PISSN: DOI 10.1371/journal.pone.0116238Publisher Public Library of ScienceCategory /Engineering and technology/Equipment; /Computer and information sciences/Computing methods; /Research and analysis methods/Research assessment/Research quality assessment; /Engineering and technology/Industrial engineering/Quality control; /Medicine and health sciences/Health care/Primary care; /Research and analysis methods/Bioassays and physiological analysis/Respiratory analysis/Spirometry; /Research and analysis methods/Database and informatics methods; /Physical sciences/Mathematics/Applied mathematics/Algorithms; /Research and analysis methods/Simulation and modeling/AlgorithmsLicense Melia et al This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
arXiv
Subject 수학 Source arXiv URL https://arxiv.org/abs/1501.00136view Article Title Local probabilities for random permutations without long cyclesAuthors Eugenijus Manstavičius; Robertas PetuchovasAbstract We explore the probability that a permutation sampled from the symmetric group of order n uniformly at random has cycles of lengths not exceeding r. Asymptotic formulas valid in specified regions for the ratio n/r are obtained using the saddle point method combined with ideas originated in analytic number theory. Theorem 1 and its detailed proof are included to rectify formulas for small r which have been announced by a few other authors.Is Part Of 2014-12-31 Identifier ISSN: Category math.CO math.PRLicense -
arXiv
Subject 수학 Source arXiv URL https://arxiv.org/abs/1501.00123view Article Title The degree of the colored HOMFLY polynomialAuthors Roland van der VeenAbstract The colored HOMLFY polynomial is an important knot invariant depending on two variables $a$ and $q$. We give bounds on the degree in both $a$ and $q$ generalizing Morton's bounds \cite{Mo86} for the ordinary HOMFLY polynomial. Our bounds suggest that the degree detects certain incompressible surfaces in the knot complement and perhaps more generally features of the $SL(N)$ character varieties of the knot group. We formulate a precise conjecture along these lines generalizing the slope conjecture of Garoufalidis \cite{Ga11}. We prove our conjecture for all positive knots. Our technique is a reformulation of the MOY state sum \cite{MOY98} using $q$-analogues of Ehrhart polynomials. As a direct application we explicitly compute the $r$ coefficients of $r$-colored HOMFLY polynomial of any positive braid.Is Part Of 2014-12-31 Identifier ISSN: Category math.QA math.GTLicense -
Springer Nature
Subject Source Springer Nature URL http://dx.doi.org/10.1186/s13054-014-0715-6view Article Title A meta-analysis to derive literature-based benchmarks for readmission and hospital mortality after patient discharge from intensive careAuthors Hosein, F Shaun; Roberts, Derek J; Turin, Tanvir Chowdhury; Zygun, David; Ghali, William A; Stelfox, Henry TAbstract AbstractIntroductionWe sought to derive literature-based summary estimates of readmission to the ICU and hospital mortality among patients discharged alive from the ICU.MethodsWe searched MEDLINE, Embase, CINAHL and the Cochrane Central Register of Controlled Trials from inception to March 2013, as well as the reference lists in the publications of the included studies. We selected cohort studies of ICU discharge prognostic factors that in which readmission to the ICU or hospital mortality among patients discharged alive from the ICU was reported. Two reviewers independently abstracted the number of patients readmitted to the ICU and hospital deaths among patients discharged alive from the ICU. Fixed effects and random effects models were used to estimate the pooled cumulative incidence of ICU readmission and the pooled cumulative incidence of hospital mortality.ResultsThe analysis included 58 studies ( n = 2,073,170 patients). The majority of studies followed patients until hospital discharge ( n = 46 studies) and reported readmission to the ICU ( n = 46 studies) or hospital mortality ( n = 49 studies). The cumulative incidence of ICU readmission was 4.0 readmissions (95% confidence interval (CI), 3.9 to 4.0) per 100 patient discharges using fixed effects pooling and 6.3 readmissions (95% CI, 5.6 to 6.9) per 100 patient discharges using random effects pooling. The cumulative incidence of hospital mortality was 3.3 deaths (95% CI, 3.3 to 3.3) per 100 patient discharges using fixed effects pooling and 6.8 deaths (95% CI, 6.1 to 7.6) per 100 patient discharges using random effects pooling. There was significant heterogeneity for the pooled estimates, which was partially explained by patient, institution and study methodological characteristics.ConclusionsUsing current literature estimates, for every 100 patients discharged alive from the ICU, between 4 and 6 patients on average will be readmitted to the ICU and between 3 and 7 patients on average will die prior to hospital discharge. These estimates can inform the selection of benchmarks for quality metrics of transitions of patient care between the ICU and the hospital ward.Is Part Of Critical Care 2014-12-31 , Vol.18 (6) , 1 Identifier EISSN: null ; PISSN: DOI 10.1186/s13054-014-0715-6Publisher BioMed CentralLicense ©2014 Hosein et al.; licensee BioMed Central. -
PLOS
Subject 의과학, 인문사회과학 Source PLOS URL http://dx.doi.org/10.1371/journal.pone.0115160view Article Title Long-Range Gene Flow and the Effects of Climatic and Ecological Factors on Genetic Structuring in a Large, Solitary Carnivore: The Eurasian LynxAuthors Mirosław Ratkiewicz; Maciej Matosiuk; Alexander P Saveljev; Vadim Sidorovich; Janis Ozolins; Peep Männil; Linas Balciauskas; Ilpo Kojola; Henryk Okarma; Rafał Kowalczyk; Krzysztof Schmidt; Michael HofreiterAbstract Due to their high mobility, large terrestrial predators are potentially capable of maintaining high connectivity, and therefore low genetic differentiation among populations. However, previous molecular studies have provided contradictory findings in relation to this. To elucidate patterns of genetic structure in large carnivores, we studied the genetic variability of the Eurasian lynx, Lynx lynx throughout north-eastern Europe using microsatellite, mitochondrial DNA control region and Y chromosome-linked markers. Using SAMOVA we found analogous patterns of genetic structure based on both mtDNA and microsatellites, which coincided with a relatively little evidence for male-biased dispersal. No polymorphism for the cytochrome b and ATP6 mtDNA genes and Y chromosome-linked markers were found. Lynx inhabiting a large area encompassing Finland, the Baltic countries and western Russia formed a single genetic unit, while some marginal populations were clearly divergent from others. The existence of a migration corridor was suggested to correspond with distribution of continuous forest cover. The lowest variability (in both markers) was found in lynx from Norway and Białowieża Primeval Forest (BPF), which coincided with a recent demographic bottleneck (Norway) or high habitat fragmentation (BPF). The Carpathian population, being monomorphic for the control region, showed relatively high microsatellite diversity, suggesting the effect of a past bottleneck (e.g. during Last Glacial Maximum) on its present genetic composition. Genetic structuring for the mtDNA control region was best explained by latitude and snow cover depth. Microsatellite structuring correlated with the lynx's main prey, especially the proportion of red deer (Cervus elaphus) in its diet. Eurasian lynx are capable of maintaining panmictic populations across eastern Europe unless they are severely limited by habitat continuity or a reduction in numbers. Different correlations of mtDNA and microsatellite population divergence patterns with climatic and ecological factors may suggest separate selective pressures acting on males and females in this solitary carnivore.Is Part Of PLoS ONE 2014-12-31 , Vol.9 (12) Identifier EISSN: 1932-6203 ; PISSN: DOI 10.1371/journal.pone.0115160Publisher Public Library of ScienceCategory /Biology and life sciences/Evolutionary biology/Population genetics; /Biology and life sciences/Evolutionary biology/Population genetics/Haplotypes; /Biology and life sciences/Evolutionary biology/Population genetics/Genetic polymorphism; /Biology and life sciences/Genetics/Population genetics/Genetic polymorphism; /Biology and life sciences/Genetics/Population genetics/Haplotypes; /Biology and life sciences/Population biology/Population genetics/Haplotypes; /Biology and life sciences/Genetics/Population genetics; /Biology and life sciences/Population biology/Population genetics; /Biology and life sciences/Genetics/DNA/Forms of DNA/Mitochondrial DNA; /Biology and life sciences/Population biology/Population genetics/Genetic polymorphism; /People and places/Geographical locations/Europe/Norway; /People and places/Geographical locations/Europe/Russia; /People and places/Geographical locations/Asia/Russia; /People and places/Geographical locations/Europe/Finland; /People and places/Geographical locations/Europe/Estonia; /Biology and life sciences/Biochemistry/Nucleic acids/DNA/Forms of DNA/Mitochondrial DNALicense Ratkiewicz et al This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.